miRBase entry: vvi-MIR166h

Stem-loop vvi-MIR166h


Accession
MI0006514
Description
Vitis vinifera vvi-MIR166h precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
8 open access papers mention vvi-MIR166h
(17 sentences)

Sequence

2307564 reads, 154729 reads per million, 2 experiments
aacaguugaggggaacgcugucugguucgagaccacucgcuucaaguacagacauaaucugaaugaucUCGGACCAGGCUUCAUUCCCCccaacucaaca
...(((((.((((((.(..(((((((((((((.((.(((......((....))......))).)).)))))))))))))..).)))))).))))).....

Structure
--aac     a      c cu             c  c   cuucaa  a 
     aguug ggggaa g  gucugguucgaga ca ucg      gu c
     ||||| |||||| |  ||||||||||||| || |||      ||  
     ucaac CCCCUU C  CGGACCAGGCUcu gu agu      ca a
acaac     c      A UU             a  a   cuaaua  g 


Annotation confidence Not enough data
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Genome context
chr5: 6741188-6741287 [-]

Database links

Mature vvi-miR166h

Accession MIMAT0005669
Description Vitis vinifera vvi-miR166h mature miRNA
Sequence 69 - UCGGACCAGGCUUCAUUCCCC - 89
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558