Stem-loop vvi-MIR169c

Accession

MI0006523

Description

Vitis vinifera vvi-MIR169c precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169c
(15 sentences)

Sequence

3758 reads, 253 reads per million, 2 experiments

gggaguagaaugCAGCCAAGGAUGACUUGCCGGagauggggcauuccucguuaauccggcaaguuguccuuggcuacauugggcucucuu
((((((..((((.((((((((((((((((((((((((((((....)))))))..))))))))))))))))))))).))))..))))))..

Structure

--      ag    C                     --       c 
  gggagu  aaug AGCCAAGGAUGACUUGCCGGa  gaugggg a
  ||||||  |||| |||||||||||||||||||||  |||||||  
  cucucg  uuac ucgguuccuguugaacggccu  uugcucc u
uu      gg    a                     aa       u 

Annotation confidence Not enough data

Genome context

chr4: 2265925-2266014 [-]

Mature vvi-miR169c

• Accession: MIMAT0005678
• Description: Vitis vinifera vvi-miR169c mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGG - 33
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558