miRBase entry: vvi-MIR169p

Stem-loop vvi-MIR169p


Accession
MI0006531
Description
Vitis vinifera vvi-MIR169p precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
8 open access papers mention vvi-MIR169p
(15 sentences)

Sequence

1973 reads, 134 reads per million, 2 experiments
aguguggaauuGAGCCAAGGAUGACUUGCCGGcagcugcagcaaggcauuaagguuuaacuggcuauaacuggcaagcauccgaggcucuguuucacccucu
((.(((((((.(((((..(((((.((((((((.(((..(((..((((......))))..))))))....)))))))))))))..))))).))))))).))..

Structure
--  u       u     AA     A        ---c   ug   ca    au 
  ag guggaau GAGCC  GGAUG CUUGCCGG    agc  cag  aggc  u
  || ||||||| |||||  ||||| ||||||||    |||  |||  ||||   
  uc cacuuug cucgg  ccuac gaacgguc    ucg  guc  uuug  a
uc  c       u     ag     -        aaua   --   aa    ga 


Annotation confidence Not enough data
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Genome context
chr11: 16347810-16347911 [+]

Database links

Mature vvi-miR169p

Accession MIMAT0005686
Description Vitis vinifera vvi-miR169p mature miRNA
Sequence 12 - GAGCCAAGGAUGACUUGCCGG - 32
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558