Stem-loop vvi-MIR169t

Accession

MI0006534

Description

Vitis vinifera vvi-MIR169t precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169t
(15 sentences)

Sequence

123 reads, 9 reads per million, 2 experiments

aggguggaauCGAGUCAAGGAUGACUUGCCGauauauauuugcggaaggacuugcaugggccuuuagcuauguguaaccggcaaguugacuugacucaguuuggcccucu
(((((.((((.((((((((...(((((((((.(((((((..((.(((((.(((....)))))))).)).)))))))..)))))))))..)))))))).)))).)))))..

Structure

--     g    C        GAU         -a       uu  g     a   g 
  agggu gaau GAGUCAAG   GACUUGCCG  uauauau  gc gaagg cuu c
  ||||| |||| ||||||||   |||||||||  |||||||  || ||||| |||  
  ucccg uuug cucaguuc   uugaacggc  augugua  cg uuucc ggg a
uc     g    a        -ag         ca       -u  a     -   u 

Annotation confidence Not enough data

Genome context

chr11: 16399567-16399676 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169t

Mature vvi-miR169t

• Accession: MIMAT0005689
• Description: Vitis vinifera vvi-miR169t mature miRNA
• Sequence: 11 - CGAGUCAAGGAUGACUUGCCG - 31
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558