miRBase entry: vvi-MIR171c

Stem-loop vvi-MIR171c


Accession
MI0006538
Description
Vitis vinifera vvi-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
7 open access papers mention vvi-MIR171c
(23 sentences)

Sequence

1423 reads, 97 reads per million, 2 experiments
ugguauuacgggauauuggugcgguucaauaagaaagcagugcucgcaaucuuuuugaguucugguuuuUGAUUGAGCCGUGCCAAUAUCacgugucauugcu
......((((.(((((((((((((((((((.(((((.(((.(((((.((....))))))).))).))))).))))))))))))))))))).))))........

Structure
--ugguau    g                   a     g   u     c  u 
        uacg gauauuggugcgguucaau agaaa cag gcucg aa c
        |||| ||||||||||||||||||| ||||| ||| ||||| ||  
        gugc CUAUAACCGUGCCGAGUUA Uuuuu guc ugagu uu u
ucguuacu    a                   G     g   u     -  u 


Annotation confidence Not enough data
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Genome context
chr12: 5487747-5487849 [-]

Database links

Mature vvi-miR171c

Accession MIMAT0005693
Description Vitis vinifera vvi-miR171c mature miRNA
Sequence 70 - UGAUUGAGCCGUGCCAAUAUC - 90
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558