Stem-loop vvi-MIR171h

Accession

MI0006542

Description

Vitis vinifera vvi-MIR171h precursor miRNA

Literature search

6 open access papers mention vvi-MIR171h
(19 sentences)

Sequence

66 reads, 4 reads per million, 2 experiments

uuucacgagauguuggugcgguucaaccuaacuguaguguccaugaauguaucgacucugauguuUGGUUGAGCCGCGCCAAUAUCccgucuaucu
....(((.((((((((((((((((((((.(((..(((.(((.(((....))).))).)))..))).)))))))))))))))))))).)))......

Structure

--uuuc   a                    u   ug   u   c   a 
      acg gauguuggugcgguucaacc aac  uag guc aug a
      ||| |||||||||||||||||||| |||  ||| ||| |||  
      ugc CUAUAACCGCGCCGAGUUGG uug  guc cag uau u
ucuauc   c                    U   ua   u   c   g 

Annotation confidence Low

Genome context

chr17: 1828653-1828748 [-]

Mature vvi-miR171h

• Accession: MIMAT0005697
• Description: Vitis vinifera vvi-miR171h mature miRNA
• Sequence: 66 - UGGUUGAGCCGCGCCAAUAUC - 86
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558