miRBase entry: vvi-MIR171i

Stem-loop vvi-MIR171i


Accession
MI0006543
Description
Vitis vinifera vvi-MIR171i precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
4 open access papers mention vvi-MIR171i
(14 sentences)

Sequence

960 reads, 65 reads per million, 2 experiments
gaagaagguggggauguuggaauggcucaaucaaaucaaaucucccaaggguuuuggguccuuuaaucUGAUUGAGCCGUGCCAAUAUCaucauguucacuuc
...(((.((((.((((((((.((((((((((((.((.(((...(((((.....)))))...))).)).)))))))))))).)))))))).)))).))).....

Structure
--gaa   g    g        a            a  c   ucu     g 
     gaa gugg gauguugg auggcucaauca au aaa   cccaa g
     ||| |||| |||||||| |||||||||||| || |||   ||||| g
     cuu uacu CUAUAACC UGCCGAGUUAGU ua uuu   ggguu u
cuuca   g    a        G            c  a   ccu     u 


Annotation confidence Not enough data
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Genome context
chr17: 893534-893636 [+]

Database links

Mature vvi-miR171i

Accession MIMAT0005698
Description Vitis vinifera vvi-miR171i mature miRNA
Sequence 69 - UGAUUGAGCCGUGCCAAUAUC - 89
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558