Stem-loop vvi-MIR172a

Accession

MI0006544

Description

Vitis vinifera vvi-MIR172a precursor miRNA

Literature search

9 open access papers mention vvi-MIR172a
(35 sentences)

Sequence

595938 reads, 5001.0 reads per million, 103 experiments

uauugccgAUGCAGCAUCAUCAAGAUUCUcauccuugaaaaguuuggcagagauaacaucaccaccgugcauuugcaugUGAAUCUUGAUGAUGCUACAUgcgcaaacaa
..((((..(((.(((((((((((((((((((....)))......(((..((.......)).))).(((((....))))).)))))))))))))))).)))..))))....

Structure

--ua    cg   C                ------------------------------------------   u 
    uugc  AUG AGCAUCAUCAAGAUUC                                          Uca c
    ||||  ||| ||||||||||||||||                                          |||  
    aacg  UAC UCGUAGUAGUUCUAAG                                          agu c
aaca    cg   A                Uguacguuuacgugccaccacuacaauagagacgguuugaaa   u 

Annotation confidence High

Genome context

gb|CP126653.1|: 20702862-20702971 [+]

Mature vvi-miR172a-5p

• Accession: MIMAT0055827
• Description: Vitis vinifera vvi-miR172a-5p mature miRNA
• Sequence: 9 - AUGCAGCAUCAUCAAGAUUCU - 29
• Evidence: experimental ; unknown

Mature vvi-miR172a-3p

• Accession: MIMAT0005699
• Description: Vitis vinifera vvi-miR172a-3p mature miRNA
• Sequence: 80 - UGAAUCUUGAUGAUGCUACAU - 100
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467