miRBase entry: vvi-MIR172b

Stem-loop vvi-MIR172b


Accession
MI0006545
Description
Vitis vinifera vvi-MIR172b precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
9 open access papers mention vvi-MIR172b
(35 sentences)

Sequence

1843 reads, 0 reads per million, 2 experiments
uauugccgaugcagcaucaucaagauucucaaccccaaaacuugaggcagcgaagauggcaucgcugccgcgccgggcuuucgcaugUGAAUCUUGAUGAUGCUACACcugcaaacaa
..((((.(.((.((((((((((((((((.((.........((((.((((((((........)))))))).))..)).........)).)))))))))))))))).)).).))))....

Structure
--ua    c a  c                u  accccaaaa  --  a        aga 
    uugc g ug agcaucaucaagauuc ca         cu  ug ggcagcga   u
    |||| | || |||||||||||||||| ||         ||  || ||||||||    
    aacg c AC UCGUAGUAGUUCUAAG gu         gg  gc ccgucgcu   g
aaca    u C  A                U  acgcuuucg  cc  g        acg 


Annotation confidence Not enough data
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Genome context
chr13: 6181370-6181487 [+]

Database links

Mature vvi-miR172b

Accession MIMAT0005700
Description Vitis vinifera vvi-miR172b mature miRNA
Sequence 88 - UGAAUCUUGAUGAUGCUACAC - 108
Evidence not_experimental

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467