miRBase entry: vvi-MIR172d

Stem-loop vvi-MIR172d


Accession
MI0006547
Description
Vitis vinifera vvi-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
9 open access papers mention vvi-MIR172d
(37 sentences)

Sequence

1833 reads, 123 reads per million, 2 experiments
guuagcugaugcagcaucaucaagauucacacccaauggaagggcagugaugcaaucucugccaaagauuuugagaUGAGAAUCUUGAUGAUGCUGCAUucgcagugaa
....((.(((((((((((((((((((((.((.((((......(((((.(((...))).))))).......))).).)).))))))))))))))))))))).))......

Structure
--guua  u                     a  c -   -uggaag     u   g 
      gc gaugcagcaucaucaagauuc ca c caa       ggcag gau  
      || ||||||||||||||||||||| || | |||       ||||| ||| c
      cg uUACGUCGUAGUAGUUCUAAG GU g guu       ccguc cua  
aaguga  c                     A  a a   uuagaaa     u   a 


Annotation confidence Not enough data
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Genome context
chr8: 12667173-12667281 [+]

Database links

Mature vvi-miR172d

Accession MIMAT0005702
Description Vitis vinifera vvi-miR172d mature miRNA
Sequence 77 - UGAGAAUCUUGAUGAUGCUGCAU - 99
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558