miRBase entry: vvi-MIR319g

Stem-loop vvi-MIR319g


Accession
MI0006551
Description
Vitis vinifera vvi-MIR319g precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
7 open access papers mention vvi-MIR319g
(25 sentences)

Sequence

40 reads, 3 reads per million, 2 experiments
gaacagcugaagagcuccuuuuaguccaauaaagagggcugaggggcggccagagcugccaucucaugcacuuggcuaugcuuauucuuuucucaaucaauucgguucgaguauggcuguggagugacaaaugcuaaguuuagccugaugcaugacaugggagcaacuccuccgcacgcuuugcccacucaUUGGACUGAAGGGAGCUCCCAgggcagaucu
.....(((...(((((((((((((((((((..((.((((.(((.(((((..((.(((.((((.(((((((...(((((.(((((.((.((((.((.((((((((...))))).))).)).)))).)).......))))).)))))...))))))).)))).)))..))...)))).).))).)))).)).)))))))))))))))))))....)))......

Structure
-gaaca   -gaa                   aa  a    u   g -    -cc  -a   g    c       cuu     u     ------u  u    u  a   -     g 
      gcu    gagcuccuuuuaguccaau  ag gggc gag g gcgg   ag  gcu ccau ucaugca   ggcua gcuua       uc uuuc ca uca auucg  
      |||    |||||||||||||||||||  || |||| ||| | ||||   ||  ||| |||| |||||||   ||||| |||||       || |||| || ||| ||||| u
      cgg    CUCGAGGGAAGUCAGGUUa  uc cccg uuc c cgcc   uc  cga ggua aguacgu   ccgau ugaau       ag gagg gu ggu ugagc  
ucuaga   gACC                   -c  a    u   g a    ucc  aa   g    c       agu     u     cguaaac  u    u  c   a     u 


Annotation confidence Not enough data
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Genome context
chr17: 3675978-3676199 [-]

Database links

Mature vvi-miR319g

Accession MIMAT0005706
Description Vitis vinifera vvi-miR319g mature miRNA
Sequence 192 - UUGGACUGAAGGGAGCUCCCA - 212
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558