Stem-loop sequence vvi-MIR393b

Accession MI0006553
Description Vitis vinifera miR393b stem-loop
Gene family MIPF0000083; MIR393
Stem-loop 
--        c            c    u     c   cu u 
  ggaggagg auccaaagggau gcau gaucc aaa  c c
  |||||||| |||||||||||| |||| ||||| |||  | c
  uuuccucc uagguuucccua cgua cuagg uuu  g a
gg        u            u    -     -   cu u
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Genome context
Coordinates (Genoscope-20100122) Overlapping transcripts
chr13: 4265132-4265214 [+]
intergenic
Database links

Mature sequence vvi-miR393b

Accession MIMAT0005708
Sequence

11 -  

uccaaagggaucgcauugauc

 - 31

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Evidence experimental; Array [2], Solexa [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).