Stem-loop vvi-MIR394a

Accession

MI0006554

Description

Vitis vinifera vvi-MIR394a precursor miRNA

Gene family

MIPF0000100; MIR394

Literature search

2 open access papers mention vvi-MIR394a
(4 sentences)

Sequence

43 reads, 3 reads per million, 2 experiments

cagagccauuUUGGCAUUCUGUCCACCUCCAUgcacaucaugggucuauauucuuuuggagguggccagcaugccaaaguggcucugua
(((((((((((((((((.(((.(((((((((.........................))))))))).))).)))))))))))))))))..

Structure

--                 U   U         Ugcacaucaug 
  cagagccauuUUGGCAU CUG CCACCUCCA           g
  ||||||||||||||||| ||| |||||||||           g
  gucucggugaaaccgua gac gguggaggu           u
au                 c   c         uuucuuauauc 

Annotation confidence Not enough data

Genome context

chr12: 17122004-17122092 [-]

Mature vvi-miR394a

• Accession: MIMAT0005709
• Description: Vitis vinifera vvi-miR394a mature miRNA
• Sequence: 11 - UUGGCAUUCUGUCCACCUCCAU - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558