Stem-loop vvi-MIR395c

Accession

MI0006558

Description

Vitis vinifera vvi-MIR395c precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention vvi-MIR395c
(23 sentences)

Sequence

7106 reads, 479 reads per million, 2 experiments

guccccuagaguucccuugaccacuucacuggggaccuucucuaguuauaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugccau
....((..((((((((((((.(((((((.((((((...((..((....))..)).)))))).))))))).))))))))))))..))......

Structure

--gucc  ua            c       c      ccu  uc  g 
      cc  gaguucccuuga cacuuca ugggga   uc  ua u
      ||  |||||||||||| ||||||| ||||||   ||  ||  
      gg  CUCAAGGGGGUU GUGAAGU auccuu   ag  au u
uaccgu  uc            U       C      --c  ua  a 

Annotation confidence Not enough data

Genome context

chr1: 6499914-6500005 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from vvi-MIR395c

Mature vvi-miR395c

• Accession: MIMAT0005713
• Description: Vitis vinifera vvi-miR395c mature miRNA
• Sequence: 62 - CUGAAGUGUUUGGGGGAACUC - 82
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558