Stem-loop vvi-MIR395d

Accession

MI0006559

Description

Vitis vinifera vvi-MIR395d precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention vvi-MIR395d
(23 sentences)

Sequence

7051 reads, 475 reads per million, 2 experiments

gcccccuagaguuccccugaccacuucauuggggaucuucucuaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugucau
....((..((((((((((((.(((((((.((((((((.........)).)))))).))))))).))))))))))))..))......

Structure

--gccc  ua            c       u      -  uuc 
      cc  gaguuccccuga cacuuca ugggga uc   u
      ||  |||||||||||| ||||||| |||||| ||   c
      gg  CUCAAGGGGGUU GUGAAGU auccuu ag   u
uacugu  uc            U       C      c  uaa 

Annotation confidence Not enough data

Genome context

chr1: 6512763-6512848 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR395d

Mature vvi-miR395d

• Accession: MIMAT0005714
• Description: Vitis vinifera vvi-miR395d mature miRNA
• Sequence: 56 - CUGAAGUGUUUGGGGGAACUC - 76
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558