Stem-loop sequence vvi-MIR395e

AccessionMI0006560 (change log)
DescriptionVitis vinifera miR395e stem-loop
Gene family MIPF0000016; MIR395
Literature search

6 open access papers mention vvi-MIR395e
(23 sentences)

Stem-loop
   --cucc  ua         ug c       c      ccu  ucuaa 
5'       cc  gaguucccu  a cacuuca ugggga   uc     u
         ||  |||||||||  | ||||||| ||||||   ||      
3'       gg  cucaagggg  u gugaagu auccuu   ag     u
   uaccgu  uc         gu u       c      --c  uaaua 
Get sequence
Deep sequencing
7235 reads, 450 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr1: 6505248-6505339 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR395e
vvi-MIR395cchr1: 6499914-6500005 [-]
vvi-MIR395bchr1: 6502664-6502753 [+]
vvi-MIR395echr1: 6505248-6505339 [+]
vvi-MIR395dchr1: 6512763-6512848 [+]
Database links

Mature sequence vvi-miR395e

Accession MIMAT0005715
Sequence

62 - 

cugaaguguuugggggaacuc

 - 82

Get sequence
Deep sequencing7153 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).