Stem-loop vvi-MIR395k

Accession

MI0006566

Description

Vitis vinifera vvi-MIR395k precursor miRNA

Literature search

6 open access papers mention vvi-MIR395k
(23 sentences)

Sequence

7105 reads, 477 reads per million, 2 experiments

uccccuagaguucccuugaccacuucacuggggaccuucucuaauuauaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugccauu
...((..((((((((((((.(((((((.((((((...((............)).)))))).))))))).))))))))))))..)).......

Structure

----ucc  ua            c       c      ccu  ucuaa 
       cc  gaguucccuuga cacuuca ugggga   uc     u
       ||  |||||||||||| ||||||| ||||||   ||      
       gg  CUCAAGGGGGUU GUGAAGU auccuu   ag     u
uuaccgu  uc            U       C      --c  uaaua 

Annotation confidence Low

Genome context

chr1: 6536780-6536871 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR395k

Mature vvi-miR395k

• Accession: MIMAT0005721
• Description: Vitis vinifera vvi-miR395k mature miRNA
• Sequence: 61 - CUGAAGUGUUUGGGGGAACUC - 81
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558