Stem-loop vvi-MIR395l

Accession

MI0006567

Description

Vitis vinifera vvi-MIR395l precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention vvi-MIR395l
(23 sentences)

Sequence

7056 reads, 476 reads per million, 2 experiments

gcccccuagaguuccccugaccacuucacugggggaucuucuguaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugucau
....((..((((((((((((.(((((((.((((((.((.........)).)))))).))))))).))))))))))))..))......

Structure

--gccc  ua            c       c      a  uuc 
      cc  gaguuccccuga cacuuca uggggg uc   u
      ||  |||||||||||| ||||||| |||||| ||   g
      gg  CUCAAGGGGGUU GUGAAGU auccuu ag   u
uacugu  uc            U       C      c  uaa 

Annotation confidence Not enough data

Genome context

chr1: 6559098-6559184 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from vvi-MIR395l

Mature vvi-miR395l

• Accession: MIMAT0005722
• Description: Vitis vinifera vvi-miR395l mature miRNA
• Sequence: 57 - CUGAAGUGUUUGGGGGAACUC - 77
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558