Stem-loop vvi-MIR396b

Accession

MI0006570

Description

Vitis vinifera vvi-MIR396b precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

5 open access papers mention vvi-MIR396b
(24 sentences)

Sequence

5359 reads, 357 reads per million, 2 experiments

uccugccaugcuuUUCCACAGCUUUCUUGAACUucuucucccuguuugguggucuccuacguuuacccauccacugaaguucaagaaagcugugggaaaccauggcuu
....((((((.((((((((((((((((((((((((............(((((..................))))))))))))))))))))))))))))).))))))..

Structure

uccu      c                        uucucccuguuu     ucuccuac 
    gccaug uuUUCCACAGCUUUCUUGAACUuc            ggugg        g
    |||||| ||||||||||||||||||||||||            |||||         
    cgguac aaagggugucgaaagaacuugaag            ucacc        u
--uu      c                        ------------     uacccauu 

Annotation confidence Not enough data

Genome context

chr11: 5246790-5246897 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR396b

Mature vvi-miR396b

• Accession: MIMAT0005725
• Description: Vitis vinifera vvi-miR396b mature miRNA
• Sequence: 14 - UUCCACAGCUUUCUUGAACU - 33
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558