miRBase entry: vvi-MIR408

Stem-loop vvi-MIR408


Accession
MI0006578
Description
Vitis vinifera vvi-MIR408 precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
5 open access papers mention vvi-MIR408
(17 sentences)

Sequence

62898 reads, 4222 reads per million, 2 experiments
aagaggaagacggggacgagguagugcauggauggaacuauuaacagaagaauguuaagcuguuuuugcucuacccAUGCACUGCCUCUUCCCUGGCucugucucuc
.(((((.(((((((((.((((((((((((((.((((.(....(((((............)))))...).)))).)))))))))))))).))))))..))).))))).

Structure
a     a   --      c              a    a uauu     aagaa 
 agagg aga  cgggga gagguagugcaugg ugga c    aacag     u
 ||||| |||  |||||| |||||||||||||| |||| |    |||||      
 ucucu ucu  GUCCCU CUCCGUCACGUAcc aucu g    uuguc     g
c     g   CG      U              c    c -uuu     gaauu 


Annotation confidence Not enough data
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Genome context
chr7: 5011935-5012041 [+]

Database links

Mature vvi-miR408

Accession MIMAT0005733
Description Vitis vinifera vvi-miR408 mature miRNA
Sequence 77 - AUGCACUGCCUCUUCCCUGGC - 97
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558