miRBase entry: vvi-MIR535a

Stem-loop vvi-MIR535a


Accession
MI0006580
Description
Vitis vinifera vvi-MIR535a precursor miRNA
Gene family
MIPF0000136; MIR535

Literature search
4 open access papers mention vvi-MIR535a
(15 sentences)

Sequence

1706811 reads, 114432 reads per million, 2 experiments
uguaauugcuUGACAACGAGAGAGAGCACGCuagucagcauucaugcgaggaacaugacuguguacaggcgugcucucucucgcugucauacaaucuucuc
....((((..(((((.((((((((((((((((.((..(((.(((((.......))))).)))..)).)))))))))))))))).)))))..))))......

Structure
--ugua    cu     A                a  ca   u     cg 
      auug  UGACA CGAGAGAGAGCACGCu gu  gca ucaug  a
      ||||  ||||| |||||||||||||||| ||  ||| |||||  g
      uaac  acugu gcucucucucgugcgg ca  ugu aguac  g
cucuuc    au     c                a  ug   c     aa 


Annotation confidence Not enough data
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Genome context
chr7: 433583-433683 [-]

Database links

Mature vvi-miR535a

Accession MIMAT0005735
Description Vitis vinifera vvi-miR535a mature miRNA
Sequence 11 - UGACAACGAGAGAGAGCACGC - 31
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558