Stem-loop sequence mml-mir-513a-3

Accession

MI0006620 (change log)

Description

Macaca mulatta miR-513a-3 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

2 open access papers mention mml-mir-513a-3
(57 sentences)

Stem-loop

              c    a   gg     u       -  ga 
5' cuguacauugc uuuc cag  aggug cauuuau gu  a
   ||||||||||| |||| |||  ||||| ||||||| ||  c
3' gacauguaaug gaag guc  uucac guaaaua ca  u
              a    a   uu     u       u  aa 

Deep sequencing

1892 reads, 0 reads per million, 9 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chrX: 140941885-140941966 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mml-mir-513a-3

• mml-mir-507: chrX: 140947139-140947232 [-]
• mml-mir-506: chrX: 140946806-140946914 [-]
• mml-mir-513a-3: chrX: 140941885-140941966 [-]
• mml-mir-513a-2: chrX: 140933333-140933412 [-]

Database links

• EntrezGene:MIR513A-3
• miRBase Tracker:MI0006620

Mature sequence mml-miR-513a

• Accession: MIMAT0005768
• Sequence: 14 - uucacagggaggugucauuuau - 35
• Deep sequencing: 2976 reads, 8 experiments
• Evidence: by similarity; MI0003191
• Predicted targets:
  • TargetScanVert:mml-miR-513a

References

1. PMID:17416744 "Rapid evolution of an X-linked microRNA cluster in primates" Zhang R, Peng Y, Wang W, Su B Genome Res. 17:612-617(2007).