Stem-loop sequence mml-mir-514a

Accession

MI0006621 (change log)

Previous IDs

mml-mir-514;mml-mir-514-1;mml-mir-514

Description

Macaca mulatta miR-514 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

1 open access papers mention mml-mir-514a
(1 sentences)

Stem-loop

       u   -   gg   c      -    g    a      u  aua 
5' augu guc ugu  uac cuacuc ugga agug caauca gu   a
   |||| ||| |||  ||| |||||| |||| |||| |||||| ||    
3' ugca cag acg  aug gaugag gucu ucac guuagu ua   u
       -   u   ua   a      u    -    a      u  aau 

Deep sequencing

99166 reads, 4.51e+03 reads per million, 9 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chrX: 140981169-140981260 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mml-mir-514a

• mml-mir-514a: chrX: 140981169-140981260 [-]
• mml-mir-510: chrX: 140974535-140974632 [-]

Database links

• EntrezGene:MIR514-1
• RNAcentral:URS000075B843_9544
• miRBase Tracker:MI0006621

Mature sequence mml-miR-514a-5p

• Accession: MIMAT0026748
• Sequence: 19 - uacucuggagagugacaauca - 39
• Deep sequencing: 404 reads, 6 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mml-miR-514a-5p

Mature sequence mml-miR-514a-3p

• Accession: MIMAT0005769
• Previous IDs: mml-miR-514
• Sequence: 56 - auugacacuucugugaguaga - 76
• Deep sequencing: 98762 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00001AADF2_9544
• Predicted targets:
  • TargetScanVert:mml-miR-514a-3p

References

1. PMID:17416744 "Rapid evolution of an X-linked microRNA cluster in primates" Zhang R, Peng Y, Wang W, Su B Genome Res. 17:612-617(2007).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).