miRBase entry: ptr-mir-506

Stem-loop ptr-mir-506


Accession
MI0006622
Description
Pan troglodytes ptr-mir-506 precursor miRNA
Gene family
MIPF0000130; mir-506


Sequence

ccauacuauguguagugccuuauucaggaagguguuacuuaauagauuaauauuugUAAGGCACCCUUCUGAGUAGAguaaugugcaacaugg
.....(((((((((.(((.((((((((((.(((((..((((.(((((....)))))))))))))).)))))))))).)))...))).))))))

Structure
ccaua      -   --g   c          a     ua    a     u 
     cuaugu gua   ugc uuauucagga ggugu  cuua uagau a
     |||||| |||   ||| |||||||||| |||||  |||| |||||  
     gguaca cgu   aug GAUGAGUCUU CCACG  GAAU guuua a
-----      a   gua   A          C     --    -     u 


Annotation confidence Not enough data
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Genome context
chrX: 146962118-146962210 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ptr-mir-506
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-506

Accession MIMAT0005770
Description Pan troglodytes ptr-miR-506 mature miRNA
Sequence 57 - UAAGGCACCCUUCUGAGUAGA - 77
Evidence not_experimental

References

  1. PubMed ID: 17416744
    Rapid evolution of an X-linked microRNA cluster in primates
    "Zhang R, Peng Y, Wang W, Su B"
    "Genome Res (2007) 17:612-617