Stem-loop sequence hsa-mir-513c

Accession

MI0006649 (change log)

Symbol

HGNC:MIR513C

Description

Homo sapiens miR-513c stem-loop

Gene family

MIPF0000130; mir-506

Literature search

25 open access papers mention hsa-mir-513c
(149 sentences)

Stem-loop

   -  -     g   c       ag      uc        gaa 
5'  gc guaca ugc uuucuca  gaggug  guuuaugu   c
    || ||||| ||| |||||||  ||||||  ||||||||    
3'  cg caugu aug gaagagu  uuccac  uaaauaua   u
   a  a     a   a       cu      uu        aaa 

Deep sequencing

4498 reads, 23.9 reads per million, 71 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 147189704-147189787 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-513c

• hsa-mir-513b: chrX: 147199044-147199127 [-]
• hsa-mir-513c: chrX: 147189704-147189787 [-]

Database links

• EntrezGene:MIR513C
• EntrezGene:MIR513C
• HGNC:MIR513C
• RNAcentral:URS000075A3A1_9606
• miRBase Tracker:MI0006649

Mature sequence hsa-miR-513c-5p

• Accession: MIMAT0005789
• Previous IDs: hsa-miR-513c
• Sequence: 14 - uucucaaggaggugucguuuau - 35
• Deep sequencing: 3070 reads, 59 experiments
• Evidence: by similarity; MI0003191
• Database links:
  • RNAcentral:URS00002A7CF3_9606
• Predicted targets:
  • TargetMiner:hsa-miR-513c-5p
  • TargetScanVert:hsa-miR-513c-5p
  • miRDB:hsa-miR-513c-5p
  • microrna.org:hsa-miR-513c-5p

Mature sequence hsa-miR-513c-3p

• Accession: MIMAT0022728
• Sequence: 49 - uaaauuucaccuuucugagaaga - 71
• Deep sequencing: 1423 reads, 35 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001A4ABF_9606
• Predicted targets:
  • TargetMiner:hsa-miR-513c-3p
  • TargetScanVert:hsa-miR-513c-3p
  • miRDB:hsa-miR-513c-3p

References

1. PMID:17416744 "Rapid evolution of an X-linked microRNA cluster in primates" Zhang R, Peng Y, Wang W, Su B Genome Res. 17:612-617(2007).