miRBase entry: oan-mir-9-1

Stem-loop oan-mir-9-1


Accession
MI0006658
Description
Ornithorhynchus anatinus oan-mir-9-1 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

2783660 reads, 36645 reads per million, 5 experiments
ggggccggaucgcacugagcuggcuuuggUCUUUGGUUAUCUAGCUGUAUGaguguaugugaugucaUAAAGCUAGAGAACCGAAUGUaaaaaccagcuuccgccgucacagccccggcccc
((((((((...((..((((((((.(((....(((((((.(((((((.(((((............))))).))))))).)))))))....))).)))))........)))..)).))))))))

Structure
        auc  ac   --------     c   ggUC       A       G     gugua 
ggggccgg   gc  uga        gcugg uuu    UUUGGUU UCUAGCU UAUGa     u
||||||||   ||  |||        ||||| |||    ||||||| ||||||| |||||      
ccccggcc   cg  acu        cgacc aaa    AAGCCAA AGAUCGA AUacu     g
        --c  ac   gccgccuu     a   aUGU       G       A     guagu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Contig6292: 18831-18952 [-]

Database links

Mature oan-miR-9-5p

Accession MIMAT0006792
Description Ornithorhynchus anatinus oan-miR-9-5p mature miRNA
Sequence 30 - UCUUUGGUUAUCUAGCUGUAUG - 51
Evidence not_experimental
Database links

Mature oan-miR-9-3p

Accession MIMAT0006793
Description Ornithorhynchus anatinus oan-miR-9-3p mature miRNA
Sequence 68 - UAAAGCUAGAGAACCGAAUGU - 88
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004