miRBase entry: oan-mir-1329

Stem-loop oan-mir-1329


Accession
MI0006663
Description
Ornithorhynchus anatinus oan-mir-1329 precursor miRNA
Gene family
MIPF0000635; mir-1329


Sequence

4836 reads, 169 reads per million, 5 experiments
gaggaaucucaaucugguuguaggggUACAGUGAUCAGGUUACGAUGGauuucucaaguaacaaCCUCGUAGCUCGGUCACGAUAuccauaugacucgaagagcaacaauuuuggucccguuccuc
(((((((.....((.(((((((.(((((..((((((.((((((((.((................)))))))))).))))))..))))).))))))).)).((.(((.....))).))..)))))))

Structure
       ---------------cucaa  u       g     CA      A        U  auuucuc 
gaggaau                    uc gguugua gggUA  GUGAUC GGUUACGA GG       a
|||||||                    || ||||||| |||||  |||||| |||||||| ||        
cuccuug                    ag ucaguau ccuAU  CACUGG UCGAUGCU CC       a
       cccugguuuuaacaacgaga  c       a     AG      C        -  aacaaug 


Annotation confidence Not enough data
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Genome context
1: 28887189-28887314 [-]

Database links

Mature oan-miR-1329-5p

Accession MIMAT0006798
Description Ornithorhynchus anatinus oan-miR-1329-5p mature miRNA
Sequence 27 - UACAGUGAUCAGGUUACGAUGG - 48
Evidence experimental
Illumina [1]

Mature oan-miR-1329-3p

Accession MIMAT0006799
Description Ornithorhynchus anatinus oan-miR-1329-3p mature miRNA
Sequence 65 - CCUCGUAGCUCGGUCACGAUA - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004