miRBase entry: oan-mir-96

Stem-loop oan-mir-96


Accession
MI0006666
Description
Ornithorhynchus anatinus oan-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96


Sequence

47 reads, 1 reads per million, 4 experiments
guggagaugucugcuuggccucuUUUGGCACUAGCACAUUUUUGCUuuugucucucugcucugagCAAUCAUGUGUAGUGCCAAUAUgggaaaagcuggaauugucagc
...((.(..(((((((..(((...(((((((((.(((((..((((((..((......))...))))))..))))))))))))))...)))..)))).)))..).))...

Structure
gug  g ug   -    gg   cuU         G     UU      -uu  cu 
   ga a  ucu gcuu  ccu   UUGGCACUA CACAU  UUGCUu   gu  c
   || |  ||| ||||  |||   ||||||||| |||||  ||||||   ||   
   cu u  agg cgaa  ggg   AACCGUGAU GUGUA  AACgag   cg  u
cga  g ua   u    aa   UAU         -     CU      ucu  uc 


Annotation confidence Not enough data
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Genome context
10: 4568763-4568871 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-96-5p

Accession MIMAT0006803
Description Ornithorhynchus anatinus oan-miR-96-5p mature miRNA
Sequence 24 - UUUGGCACUAGCACAUUUUUGCU - 46
Evidence experimental
Illumina [1]

Mature oan-miR-96-3p

Accession MIMAT0006804
Description Ornithorhynchus anatinus oan-miR-96-3p mature miRNA
Sequence 66 - CAAUCAUGUGUAGUGCCAAUAU - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004