miRBase entry: oan-mir-183

Stem-loop oan-mir-183


Accession
MI0006667
Description
Ornithorhynchus anatinus oan-mir-183 precursor miRNA
Gene family
MIPF0000066; mir-183


Sequence

1858 reads, 38 reads per million, 5 experiments
ggagggggagacccucacuccuguucugugUAUGGCACUGGUAGAAUUCACUgugaaaacacacuaucagugaauuaccaaagggccauaaacagagcagagaaagaaccacaagacucucccaucucucc
(((((((((((..(((..(((((((((((.((((((..(((((..((((((((..(........)..)))))))))))))....)))))).))))))))).))..)).......)..)))))).)))))..

Structure
--     -      cc -------  ac  -         g      --AC     GA        ug aaa 
  ggagg gggaga  c       uc  uc cuguucugu UAUGGC    UGGUA  AUUCACUg  a   c
  ||||| ||||||  |       ||  || ||||||||| ||||||    |||||  ||||||||  |    
  ucucu cccucu  g       ag  ag gacgagaca auaccg    accau  uaagugac  u   a
cc     a      ca aacacca  aa  a         a      ggaa     --        ua cac 


Annotation confidence Not enough data
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Genome context
10: 4569067-4569197 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-183

Accession MIMAT0006805
Description Ornithorhynchus anatinus oan-miR-183 mature miRNA
Sequence 31 - UAUGGCACUGGUAGAAUUCACU - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004