miRBase entry: oan-mir-193

Stem-loop oan-mir-193


Accession
MI0006676
Description
Ornithorhynchus anatinus oan-mir-193 precursor miRNA
Gene family
MIPF0000082; mir-193


Sequence

2373 reads, 58 reads per million, 5 experiments
gguugugauuccagaguCGGGGUUUUGAGGGCGAGAUGAguuuguguuuuauccAACUGGCCCACAAAGUCCCGCUuuugguggucacuuugauc
....((((((((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).)))))).)))))).......

Structure
---gguu      -      u          A    G  A  A  uug 
       gugauu ccagag CGGGGUUUUG GGGC AG UG gu   u
       |||||| |||||| |||||||||| |||| || || ||   g
       cacugg gguuuU GCCCUGAAAC CCCG UC Ac ua   u
cuaguuu      u      C          A    G  A  c  uuu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
2: 29910999-29911093 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-193
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-193-5p

Accession MIMAT0006820
Description Ornithorhynchus anatinus oan-miR-193-5p mature miRNA
Sequence 18 - CGGGGUUUUGAGGGCGAGAUGA - 39
Evidence experimental
Illumina [1]

Mature oan-miR-193-3p

Accession MIMAT0006821
Description Ornithorhynchus anatinus oan-miR-193-3p mature miRNA
Sequence 55 - AACUGGCCCACAAAGUCCCGCU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004