Stem-loop oan-mir-181a-1

Accession

MI0006685

Description

Ornithorhynchus anatinus oan-mir-181a-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Sequence

1358344 reads, 22207 reads per million, 5 experiments

gaauucugcuucgaaugguugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauuaaaguagaaACCAUCGACCGUUGAUUGUACCcugcggcaaccaccguccuccuuucuucaugcuuuc
(((........((..((((((((.(((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))).)))))))).)).......)))...........

Structure

-----------   uucugcuu  aa        u   u A   U      CU       A    ggaau 
           gaa        cg  ugguugcu cag g ACA UCAACG  GUCGGUG GUuu     u
           |||        ||  |||||||| ||| | ||| ||||||  ||||||| ||||     a
           cuu        gc  accaacgg guc C UGU AGUUGC  CAGCUAC CAaa     a
cuuucguacuu   -uccuccu  -c        c   C A   U      --       -    gauga 

Annotation confidence High

Genome context

4: 46540174-46540300 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-181a-1

Mature oan-miR-181a-5p

• Accession: MIMAT0006833
• Description: Ornithorhynchus anatinus oan-miR-181a-5p mature miRNA
• Sequence: 30 - AACAUUCAACGCUGUCGGUGAGU - 52
• Evidence: experimental ; Illumina [1]

Mature oan-miR-181a-1-3p

• Accession: MIMAT0006834
• Description: Ornithorhynchus anatinus oan-miR-181a-1-3p mature miRNA
• Sequence: 70 - ACCAUCGACCGUUGAUUGUACC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004