Stem-loop oan-mir-1338

Accession

MI0006688

Description

Ornithorhynchus anatinus oan-mir-1338 precursor miRNA

Sequence

1264 reads, 29 reads per million, 5 experiments

ggccucuuucuaguuguuggggaugCAGGGAGCAGACCAGUCCAGUagaguugccuucaauuaaguuccCACUGGGCUUGUGCUCACUGUCucccugcuucuguagccugugggcc
(((((.....(((..((((.(((.(((((((((((((.((((((((.((.(((........))).))...)))))))).)).....))).)))))))).))).))))))).)))))

Structure

     cuuuc   uu    g   u        -   -----  C        --a  g   ccu 
ggccu     uag  guug gga gCAGGGAG CAG     AC AGUCCAGU   ga uug   u
|||||     |||  |||| ||| |||||||| |||     || ||||||||   || |||    
ccggg     guc  cgau ucu cgucccuC GUC     UG UCGGGUCA   uu aau   c
     ----u   --    g   u        U   ACUCG  U        Ccc  g   uaa 

Annotation confidence High

Genome context

5: 7094283-7094398 [+]

Mature oan-miR-1338-5p

• Accession: MIMAT0006839
• Description: Ornithorhynchus anatinus oan-miR-1338-5p mature miRNA
• Sequence: 26 - CAGGGAGCAGACCAGUCCAGU - 46
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1338-3p

• Accession: MIMAT0006840
• Description: Ornithorhynchus anatinus oan-miR-1338-3p mature miRNA
• Sequence: 70 - CACUGGGCUUGUGCUCACUGUC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004