miRBase entry: oan-mir-106

Stem-loop oan-mir-106


Accession
MI0006693
Description
Ornithorhynchus anatinus oan-mir-106 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

4025 reads, 132 reads per million, 5 experiments
acuugguguuggauaggccuugguugugcAAAAGUGCUUACAGUGCAGGUagcuuuuaguaccuACUGCAAUGUAAGCACUUCUAGcauuaccauggcaauucaaucaaugagu
(((((.((((((((..(((.((((.((((..(((((((((((.((((((((........))))...)))).)))))))))))...)))).)))).))).)))))).)).)))))

Structure
     g  -      ag   u    u    -AA           G    ---    gcu 
acuug ug uuggau  gcc uggu gugc   AAGUGCUUACA UGCA   GGUa   u
||||| || ||||||  ||| |||| ||||   ||||||||||| ||||   ||||    
ugagu ac aacuua  cgg acca uacG   UUCACGAAUGU ACGU   ccau   u
     a  u      -a   u    u    AUC           A    CAu    gau 


Annotation confidence High
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Genome context
6: 8561054-8561167 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from oan-mir-106
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-106-5p

Accession MIMAT0006849
Description Ornithorhynchus anatinus oan-miR-106-5p mature miRNA
Sequence 30 - AAAAGUGCUUACAGUGCAGGU - 50
Evidence experimental
Illumina [1]

Mature oan-miR-106-3p

Accession MIMAT0006850
Description Ornithorhynchus anatinus oan-miR-106-3p mature miRNA
Sequence 65 - ACUGCAAUGUAAGCACUUCUAG - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004