Stem-loop oan-mir-18

Accession

MI0006694

Description

Ornithorhynchus anatinus oan-mir-18 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

903 reads, 24 reads per million, 5 experiments

gcuauccauuucagaaugucccuuguguUAAGGUGCAUCUAGUGCAGUuagugaaguagcuuagaaucUACUGCCCUAAAUGCUCCUUCUggcacaagcugccuaauauacaacuucgaaauccaugcgu
((.....(((((.(((.((..((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..)))))))))..))............))))))))....))..

Structure

--  uaucc     a   -----------u  cc         --   U    C   U     u  ugaagua 
  gc     auuuc gaa            gu  cuuguguUA  AGG GCAU UAG GCAGU ag       g
  ||     ||||| |||            ||  |||||||||  ||| |||| ||| ||||| ||        
  cg     uaaag cuu            cg  gaacacggU  UCC CGUA AUC CGUCA Uc       c
ug  -uacc     -   caacauauaauc  uc         CU   U    A   C     -  uaagauu 

Annotation confidence High

Genome context

6: 8561213-8561342 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oan-mir-18

Mature oan-miR-18-5p

• Accession: MIMAT0006851
• Description: Ornithorhynchus anatinus oan-miR-18-5p mature miRNA
• Sequence: 29 - UAAGGUGCAUCUAGUGCAGU - 48
• Evidence: experimental ; Illumina [1]

Mature oan-miR-18-3p

• Accession: MIMAT0006852
• Description: Ornithorhynchus anatinus oan-miR-18-3p mature miRNA
• Sequence: 69 - UACUGCCCUAAAUGCUCCUUCU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004