miRBase entry: oan-mir-19b-1

Stem-loop oan-mir-19b-1


Accession
MI0006696
Description
Ornithorhynchus anatinus oan-mir-19b-1 precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

6077 reads, 160 reads per million, 5 experiments
aagacaguacugcuuacagucAGUUUUGCAGGUUUGCAUCCcagcguauacaaauugcUGUGCAAAUCCAUGCAAAACUGAuugugaugguguuugcuaucuu
((((.(((((((.(((((((((((((((((((((((((...(((((.........))))))))))).)).)))))))))))))))))))))....))).))))

Structure
    c   ----    c                 -  -      UCC     uau 
aaga agu    acug uuacagucAGUUUUGCA GG UUUGCA   cagcg   a
|||| |||    |||| ||||||||||||||||| || ||||||   |||||   c
uucu ucg    uggu aguguuAGUCAAAACGU CC AAACGU   GUcgu   a
    a   uuug    -                 A  U      ---     uaa 


Annotation confidence Not enough data
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Genome context
6: 8561559-8561661 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from oan-mir-19b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-19b-1-5p

Accession MIMAT0006855
Description Ornithorhynchus anatinus oan-miR-19b-1-5p mature miRNA
Sequence 22 - AGUUUUGCAGGUUUGCAUCC - 41
Evidence experimental
Illumina [1]

Mature oan-miR-19b-3p

Accession MIMAT0006856
Description Ornithorhynchus anatinus oan-miR-19b-3p mature miRNA
Sequence 59 - UGUGCAAAUCCAUGCAAAACUGA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004