miRBase entry: oan-mir-92a-1

Stem-loop oan-mir-92a-1


Accession
MI0006697
Description
Ornithorhynchus anatinus oan-mir-92a-1 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

31961 reads, 666 reads per million, 5 experiments
aucugagaagguuuugcacugauuccuccauGGGUGGGGAUUUGUUGCAUUACUuguagcuauguuuagagUAUUGCACUUGUCCCGGCCUGUggagggaaggaggacuugucaucaggu
(((((((((((((((.(.((..(((((((((((((.(((((..((.(((.(((((..(((...)))..))))).)))))..))))).))))))))))))))))))))))).)).))))))

Structure
      -  -       g a  ga             G     UU  U   U     gu   u 
aucuga ga agguuuu c cu  uuccuccauGGGU GGGAU  GU GCA UACUu  agc  
|||||| || ||||||| | ||  ||||||||||||| |||||  || ||| |||||  ||| a
uggacu cu uucagga g ga  agggaggUGUCCG CCCUG  CA CGU AUgag  uug  
      a  g       - -  --             G     UU  -   U     au   u 


Annotation confidence Not enough data
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Genome context
6: 8561691-8561810 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from oan-mir-92a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-92a-1-5p

Accession MIMAT0006857
Description Ornithorhynchus anatinus oan-miR-92a-1-5p mature miRNA
Sequence 32 - GGGUGGGGAUUUGUUGCAUUACU - 54
Evidence experimental
Illumina [1]

Mature oan-miR-92a-3p

Accession MIMAT0006858
Description Ornithorhynchus anatinus oan-miR-92a-3p mature miRNA
Sequence 72 - UAUUGCACUUGUCCCGGCCUGU - 93
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004