miRBase entry: oan-mir-29a-2

Stem-loop oan-mir-29a-2


Accession
MI0006702
Description
Ornithorhynchus anatinus oan-mir-29a-2 precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

20777 reads, 401 reads per million, 5 experiments
caggacccaucucuuacacaggcUGACCGAUUUCUCUUGGUGUUcagagucucaguucuugucUAGCACCAUUUGAAAUCGGUUaugauguagggggaaaagcagcaguccug
((((((...(((((((((((...(((((((((((...(((((((.(((.............))))))))))...))))))))))))).)))))))))..........))))))

Structure
      -------cca         -  ggc           UCU       c   gucuc 
caggac          ucucuuaca ca   UGACCGAUUUC   UGGUGUU aga     a
||||||          ||||||||| ||   |||||||||||   ||||||| |||     g
guccug          gggggaugu gu   aUUGGCUAAAG   ACCACGA Ucu     u
      acgacgaaaa         a  ---           UUU       -   guucu 


Annotation confidence High
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Genome context
7: 38484002-38484114 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-29a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-29a-3p

Accession MIMAT0006807
Description Ornithorhynchus anatinus oan-miR-29a-3p mature miRNA
Sequence 64 - UAGCACCAUUUGAAAUCGGUU - 84
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-29a-2-5p

Accession MIMAT0009167
Description Ornithorhynchus anatinus oan-miR-29a-2-5p mature miRNA
Sequence 24 - UGACCGAUUUCUCUUGGUGUU - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004