miRBase entry: oan-mir-135b-1

Stem-loop oan-mir-135b-1


Accession
MI0006705
Description
Ornithorhynchus anatinus oan-mir-135b-1 precursor miRNA
Gene family
MIPF0000028; mir-135


Sequence

19956 reads, 390 reads per million, 5 experiments
cggauccucccuuggcucucugcuguggccUAUGGCUUUUUAUUCCUAUGUGAuugcugcuuugaacucAUGUAGGGCUGAAAGCCAUGGGcuacagagaggggagagacaccg
(((.(((((((......((((.((((((((((((((((((...((((((((((...(......)...))))))))))..))))))))))))))))))))))))))).))..)))

Structure
   -a  -     uuggcu    g                  UAU          uug ug 
cgg  uc cuccc      cucu cuguggccUAUGGCUUUU   UCCUAUGUGA   c  c
|||  || |||||      |||| ||||||||||||||||||   ||||||||||   |   
gcc  ag gaggg      gaga gacaucGGGUACCGAAAG   GGGAUGUAcu   g  u
   ac  a     ------    -                  -UC          caa uu 


Annotation confidence High
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Genome context
Contig10074: 3245-3358 [-]

Database links

Mature oan-miR-135b-5p

Accession MIMAT0006870
Description Ornithorhynchus anatinus oan-miR-135b-5p mature miRNA
Sequence 31 - UAUGGCUUUUUAUUCCUAUGUGA - 53
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-135b-1-3p

Accession MIMAT0006871
Description Ornithorhynchus anatinus oan-miR-135b-1-3p mature miRNA
Sequence 70 - AUGUAGGGCUGAAAGCCAUGGG - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004