miRBase entry: oan-mir-1341

Stem-loop oan-mir-1341


Accession
MI0006706
Description
Ornithorhynchus anatinus oan-mir-1341 precursor miRNA


Sequence

716 reads, 45 reads per million, 5 experiments
ggagggggcuccuccggcaguGUGCGUGAUGACAACUUUGGCCGUaggaaagcuuggggaccgguuggucuucacgaagcucccugugacggcacugucauaguuacccugaaugcacugccgggagggagacgcaccuuc
((((((.((((((((((((((((.(((((.(((((((..((((.((((....)))).)).)))))).))).))))).......((((((((....))))))))...........))))))))))..))))).).).)))))

Structure
     - g -     --          -------------------------------------G     U   -    UU  -  G    a 
ggagg g g cuccu  ccggcaguGU                                      CGUGA GAC AACU  GG CC Uagg a
||||| | | |||||  ||||||||||                                      ||||| ||| ||||  || || ||||  
cuucc c c gaggg  ggccgucacg                                      gcacu cug uugg  cc gg guuc a
     a g a     ag          uaagucccauugauacugucacggcagugucccucgaa     u   g    --  a  g    g 


Annotation confidence Low
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Genome context
Contig10522: 37905-38045 [-]

Database links

Mature oan-miR-1341

Accession MIMAT0006872
Description Ornithorhynchus anatinus oan-miR-1341 mature miRNA
Sequence 22 - GUGCGUGAUGACAACUUUGGCCGU - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004