miRBase entry: oan-mir-1422h

Stem-loop oan-mir-1422h


Accession
MI0006713
Description
Ornithorhynchus anatinus oan-mir-1422h precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

16996 reads, 9375 reads per million, 4 experiments
acaucaugauucugguuUUAGUCAUGAAAGCGUUUUUUCaguauuaauaauuggGAAAUCGUUGUCAUGACUGAGCccaugaucauauuaugu
((((.((((((.(((.(((((((((((.((((.(((((((((.......))))))))).)))).))))))))))).))).))))))...))))

Structure
    --c      c   u           A    U         au 
acau   augauu ugg uUUAGUCAUGA AGCG UUUUUCagu  u
||||   |||||| ||| ||||||||||| |||| |||||||||  a
ugua   uacuag acc GAGUCAGUACU UUGC AAAGgguua  a
    uua      u   C           G    U         au 


Annotation confidence High
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Genome context
Contig11344: 3983-4075 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from oan-mir-1422h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422h-5p

Accession MIMAT0006883
Description Ornithorhynchus anatinus oan-miR-1422h-5p mature miRNA
Sequence 18 - UUAGUCAUGAAAGCGUUUUUUC - 39
Evidence experimental
Illumina [1]

Mature oan-miR-1422h-3p

Accession MIMAT0006884
Description Ornithorhynchus anatinus oan-miR-1422h-3p mature miRNA
Sequence 55 - GAAAUCGUUGUCAUGACUGAGC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004