miRBase entry: oan-mir-30c-2

Stem-loop oan-mir-30c-2


Accession
MI0006728
Description
Ornithorhynchus anatinus oan-mir-30c-2 precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

111128 reads, 2267 reads per million, 5 experiments
cuguucuaaagagcccugagugacagguacUGUAAACAUCCUACACUCUCAGCuguagaugugagaaagCUGGGAGAAGGCUGUUUACUCUcucugccuuggaaaucagccaaagagaacag
(((((((........((((.(..((((((..(((((((.(((...(((((((((.............))))))))).))).)))))))......)))).))..).))))......)))))))

Structure
       aaagagcc    g ga  -    ----cU       U   ACA         guaga 
cuguucu        cuga u  ca ggua      GUAAACA CCU   CUCUCAGCu     u
|||||||        |||| |  || ||||      ||||||| |||   |||||||||     g
gacaaga        gacu a  gu ccgu      CAUUUGU GGA   GAGGGUCga     u
       --gaaacc    a ag  u    cucUCU       C   --A         aagag 


Annotation confidence High
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Genome context
Contig1501: 64364-64485 [-]

Database links

Mature oan-miR-30c-5p

Accession MIMAT0006911
Description Ornithorhynchus anatinus oan-miR-30c-5p mature miRNA
Sequence 31 - UGUAAACAUCCUACACUCUCAGC - 53
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-30c-2-3p

Accession MIMAT0006912
Description Ornithorhynchus anatinus oan-miR-30c-2-3p mature miRNA
Sequence 70 - CUGGGAGAAGGCUGUUUACUCU - 91
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004