Stem-loop oan-mir-208

Accession

MI0006734

Description

Ornithorhynchus anatinus oan-mir-208 precursor miRNA

Gene family

MIPF0000178; mir-208

Sequence

13 reads, 1 reads per million, 2 experiments

cgagcuggcccuggaccacuuccugugacagacAAGCUUUUGGCCCAGAUUAUACcugacauucccguAUAAGACGAGCAAAAAGCUUGUuggucagaggagccaccaucg
((((.((((...........((((.((((.(((((((((((.((.(...((((((..((...))..))))))...).)).))))))))))).)))).)))))))).).)))

Structure

   - c    ccuggaccacu    g    a           G  C AGA      cu  c 
cga g uggc           uccu ugac gacAAGCUUUU GC C   UUAUAC  ga  
||| | ||||           |||| |||| ||||||||||| || |   ||||||  || a
gcu c accg           agga acug uUGUUCGAAAA CG G   AAUAug  cu  
   a c    -----------    g    g           A  A CAG      cc  u 

Annotation confidence Not enough data

Genome context

Contig16216: 10170-10280 [-]

Mature oan-miR-208-5p

• Accession: MIMAT0006920
• Description: Ornithorhynchus anatinus oan-miR-208-5p mature miRNA
• Sequence: 34 - AAGCUUUUGGCCCAGAUUAUAC - 55
• Evidence: experimental ; Illumina [1]

Mature oan-miR-208-3p

• Accession: MIMAT0006921
• Description: Ornithorhynchus anatinus oan-miR-208-3p mature miRNA
• Sequence: 69 - AUAAGACGAGCAAAAAGCUUGU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004