Stem-loop oan-mir-1347

Accession

MI0006740

Description

Ornithorhynchus anatinus oan-mir-1347 precursor miRNA

Gene family

MIPF0000574; mir-1420

Sequence

9 reads, 13 reads per million, 2 experiments

cucuugauuuaaaaaaaaAAAGUGCAACCAGAUUGGAUGAaguugguugggacuuugcuuccaagaugggaauccuuuagccacuuuccagaacucccaagacucuccaaccuggugcuggaaaaggg
.......................(((.((((.(((((.((.(((..((((((.(((......(((.(((...........))))))....))).)))))))))))))))).)))))))..........

Structure

cucuugauuuaaaaaaaaAAAGU   A    A     U  a   gg      c   gcuucc   a   gaau 
                       GCA CCAG UUGGA GA guu  uuggga uuu      aag ugg    c
                       ||| |||| ||||| || |||  |||||| |||      ||| |||    c
                       cgu gguc aaccu cu cag  aacccu aag      uuc acc    u
-------------gggaaaaggu   -    c     -  -   --      c   --accu   -   gauu 

Annotation confidence Not enough data

Genome context

Contig1754: 88992-89119 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oan-mir-1347

Mature oan-miR-1347

• Accession: MIMAT0006930
• Description: Ornithorhynchus anatinus oan-miR-1347 mature miRNA
• Sequence: 19 - AAAGUGCAACCAGAUUGGAUGA - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004