Stem-loop oan-mir-103-2

Accession

MI0006748

Description

Ornithorhynchus anatinus oan-mir-103-2 precursor miRNA

Gene family

MIPF0000024; mir-103

Sequence

412713 reads, 6663 reads per million, 5 experiments

gagcugcgccguccuuggugcuuucAGCUUCUUUACAGUGCUGCCUUGuugcauucaugucaAGCAGCAUUGUACAGGGCUAUGAaagaaccaagguuuuugcuu
.....(((....(((((((.(((((((((.((.(((((((((((.(((..(((....))))))))))))))))).)))))..)))))).)))))))....)))..

Structure

gagcu   ccgu       g      --   U  U           C   uu   u 
     gcg    ccuuggu cuuucA  GCU CU UACAGUGCUGC UUG  gca u
     |||    ||||||| ||||||  ||| || ||||||||||| |||  |||  
     cgu    ggaacca gaaAGU  CGG GA AUGUUACGACG Aac  ugu c
---uu   uuuu       a      AU   -  C           -   --   a 

Annotation confidence High

Genome context

Contig19877: 3174-3278 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-103-2

Mature oan-miR-103-2-5p

• Accession: MIMAT0006941
• Description: Ornithorhynchus anatinus oan-miR-103-2-5p mature miRNA
• Sequence: 26 - AGCUUCUUUACAGUGCUGCCUUG - 48
• Evidence: experimental ; Illumina [1]

Mature oan-miR-103-3p

• Accession: MIMAT0006942
• Description: Ornithorhynchus anatinus oan-miR-103-3p mature miRNA
• Sequence: 63 - AGCAGCAUUGUACAGGGCUAUGA - 85
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004