miRBase entry: oan-mir-1420f

Stem-loop oan-mir-1420f


Accession
MI0006750
Description
Ornithorhynchus anatinus oan-mir-1420f precursor miRNA
Gene family
MIPF0000574; mir-1420


Sequence

82 reads, 118 reads per million, 3 experiments
ggugaaccagcuccccucucccacccugccuaccuaacccggcugcacucccuggauguagaaagcagAAAGUGCGACCGGAUUGGGUaaguucggguggggaaucauc
((.((......)).))((.(((((((.((.(((((((.((((.((((((..(((...........)))..)))))).)))).))))))).))..)))))))))......

Structure
ggugaaccagcucccc  u       -u  c       c    c      cc   gaug 
                uc cccaccc  gc uaccuaa ccgg ugcacu  cug    u
                || |||||||  || ||||||| |||| ||||||  |||    a
                ag ggguggg  ug aUGGGUU GGCC GCGUGA  gac    g
----------cuacua  -       cu  a       A    A      AA   gaaa 


Annotation confidence Not enough data
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Genome context
Contig198872: 51-159 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-1420f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1420f

Accession MIMAT0006944
Description Ornithorhynchus anatinus oan-miR-1420f mature miRNA
Sequence 69 - AAAGUGCGACCGGAUUGGGU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004