Stem-loop oan-mir-499

Accession

MI0006754

Description

Ornithorhynchus anatinus oan-mir-499 precursor miRNA

Gene family

MIPF0000173; mir-499

Sequence

804282 reads, 15780 reads per million, 5 experiments

agccugggggggcagcggUUAAGACUUGUAGUGAUGUUUagcucaucuccacgugAACAUCACUGCAAGUCUGUGCUgcuucuccccuccu
.....(((((((.((((((..(((((((((((((((((((.............)))))))))))))))))))..))))))...))))))).

Structure

agccu       --c      UA                   gcuca 
     ggggggg   agcggU  AGACUUGUAGUGAUGUUUa     u
     |||||||   ||||||  |||||||||||||||||||     c
     ccucccc   ucgUCG  UCUGAACGUCACUACAAgu     u
----u       ucu      UG                   gcacc 

Annotation confidence High

Genome context

Contig212181: 155-245 [+]

Mature oan-miR-499-5p

• Accession: MIMAT0006949
• Description: Ornithorhynchus anatinus oan-miR-499-5p mature miRNA
• Sequence: 19 - UUAAGACUUGUAGUGAUGUUU - 39
• Evidence: experimental ; Illumina [1]

Mature oan-miR-499-3p

• Accession: MIMAT0006950
• Description: Ornithorhynchus anatinus oan-miR-499-3p mature miRNA
• Sequence: 56 - AACAUCACUGCAAGUCUGUGCU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004