miRBase entry: oan-mir-24-1

Stem-loop oan-mir-24-1


Accession
MI0006757
Description
Ornithorhynchus anatinus oan-mir-24-1 precursor miRNA
Gene family
MIPF0000041; mir-24


Sequence

149238 reads, 2342 reads per million, 5 experiments
ggacugacccuccagUGCCUACUGAGCUGAUAUCAguucucguugacccacUGGCUCAGUUCAGCAGGAACAGgagugcggccc
((.(((.(.((((.((.(((.(((((((((..(((((((.....))...))))).))))))))).))).)).)))).)))))).

Structure
-  a   a c    a  G   A         UA     ---  u 
 gg cug c cucc gU CCU CUGAGCUGA  UCAgu   uc c
 || ||| | |||| || ||| |||||||||  |||||   || g
 cc ggc g gagG CA GGA GACUUGACU  GGUca   ag u
c  -   - u    A  A   C         -C     ccc  u 


Annotation confidence High
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Genome context
Contig22293: 5770-5853 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-24-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-24-1-5p

Accession MIMAT0006954
Description Ornithorhynchus anatinus oan-miR-24-1-5p mature miRNA
Sequence 16 - UGCCUACUGAGCUGAUAUCA - 35
Evidence experimental
Illumina [1]

Mature oan-miR-24-3p

Accession MIMAT0006955
Description Ornithorhynchus anatinus oan-miR-24-3p mature miRNA
Sequence 52 - UGGCUCAGUUCAGCAGGAACAG - 73
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004