miRBase entry: oan-mir-23b

Stem-loop oan-mir-23b


Accession
MI0006759
Description
Ornithorhynchus anatinus oan-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

7935 reads, 151 reads per million, 5 experiments
gcgaucgaucccggcccggcugccUGGGUUCCUGGCAUGCUGAUUUgugacuuaagagaaaaAUCACAUUGCCAGGGAUAACCAcgcauccgggaccgccccccgccgc
(((..((....((((((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))))).))).....)).)))

Structure
   au  -aucc   -     c   c   --          -  C      gugacu 
gcg  cg     cgg cccgg ugc UGG  GUUCCUGGCA UG UGAUUU      u
|||  ||     ||| ||||| ||| |||  |||||||||| || ||||||       
cgc  gc     gcc gggcc acg ACC  UAGGGACCGU AC ACUAaa      a
   -c  ccccc   a     u   c   AA          U  -      aagaga 


Annotation confidence High
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Genome context
Contig22293: 6504-6612 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-23b-5p

Accession MIMAT0006958
Description Ornithorhynchus anatinus oan-miR-23b-5p mature miRNA
Sequence 25 - UGGGUUCCUGGCAUGCUGAUUU - 46
Evidence experimental
Illumina [1]

Mature oan-miR-23b-3p

Accession MIMAT0006959
Description Ornithorhynchus anatinus oan-miR-23b-3p mature miRNA
Sequence 63 - AUCACAUUGCCAGGGAUAACCA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004