Stem-loop oan-mir-22

Accession

MI0006761

Description

Ornithorhynchus anatinus oan-mir-22 precursor miRNA

Gene family

MIPF0000053; mir-22

Sequence

42992 reads, 1072 reads per million, 5 experiments

cccgugugccggcccgggccuggcugagucacagcAGUUCUUCAGUGGCAAGCUUUAcguccugucccagcuaAAGCUGCCAGUUGAAGAACUGUugaacucagccccugucugccacgagg
((((((.((.(((..(((...((((((((..(((((((((((((((((((.((((((.((.........))))))))))))).)))))))))))))).)))))))))))))).)))))).))

Structure

  -    u  c   cc   ccu        ca              -     A      c  ccu 
cc cgug gc ggc  ggg   ggcugagu  cagcAGUUCUUCAG UGGCA GCUUUA gu   g
|| |||| || |||  |||   ||||||||  |||||||||||||| ||||| |||||| ||   u
gg gcac cg cug  ucc   ccgacuca  guUGUCAAGAAGUU ACCGU CGAAau cg   c
  a    -  u   --   ---        -a              G     -      -  acc 

Annotation confidence High

Genome context

Contig225389: 256-377 [+]

Mature oan-miR-22-5p

• Accession: MIMAT0006961
• Description: Ornithorhynchus anatinus oan-miR-22-5p mature miRNA
• Sequence: 36 - AGUUCUUCAGUGGCAAGCUUUA - 57
• Evidence: experimental ; Illumina [1]

Mature oan-miR-22-3p

• Accession: MIMAT0006962
• Description: Ornithorhynchus anatinus oan-miR-22-3p mature miRNA
• Sequence: 74 - AAGCUGCCAGUUGAAGAACUGU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004