miRBase entry: oan-mir-1421a

Stem-loop oan-mir-1421a


Accession
MI0006762
Description
Ornithorhynchus anatinus oan-mir-1421a precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

26 reads, 46 reads per million, 1 experiments
gaucugcggcacgguguuagCAGGUUACAUGCGGUGCAGUAUgguaguggaaaaugCUGCAUCCCUUGUGACCUCCGUacagagugccauguc
.......(((((..(((..(.((((((((.(.((((((((((...........)))))))))).).)))))))).)..)))..))))).....

Structure
gaucugc     gg   ua C        U C          ggua 
       ggcac  ugu  g AGGUUACA G GGUGCAGUAU    g
       |||||  |||  | |||||||| | ||||||||||    u
       ccgug  aca  C UCCAGUGU C CUACGUCgua    g
--cugua     ag   UG C        U C          aaag 


Annotation confidence Not enough data
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Genome context
Contig22847: 75-167 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421a-5p

Accession MIMAT0006963
Description Ornithorhynchus anatinus oan-miR-1421a-5p mature miRNA
Sequence 21 - CAGGUUACAUGCGGUGCAGUAU - 42
Evidence experimental
Illumina [1]

Mature oan-miR-1421a-3p

Accession MIMAT0006964
Description Ornithorhynchus anatinus oan-miR-1421a-3p mature miRNA
Sequence 57 - CUGCAUCCCUUGUGACCUCCGU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004